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Publications

Full Curriculum Vitae Software Software Available Watch Watch the Talk OpenAccess Open Access

2022

Temperature mediated transgenerational plasticity influences movement behaviour in the green algae Chlamydomonas reinhardtii. H. Meier, I. Schuman, T. Layden, A. Ritz, C. Kremer, and S. Fey. Functional Ecology. In press.

A. Bumin, A. Ritz, D. Slonim, T. Kaveci, and K. Huang. 13th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM-BCB) 2022. Best Student Paper Award.

A. Nambiar, M. Heflin, S. Liu, J. M. Forsyth, S. Maslov, M. Hopkins, and A. Ritz. Journal of Computational Biology 2022. Software

T. Rubel, P. Singh, and A. Ritz. Proceedings of the Pacific Symposium on Biocomputing 2022. OpenAccess Software

2021

E. Leininger, K. Shaw, N. Moshiri, K. Neiles, G. Onsongo, and A. Ritz. PLOS Computational Biology 2021. OpenAccess

H. Zeng, J. Zhang, G. A. Preising, T. Rubel, P. Singh, and A. Ritz. Nucleic Acids Research 2021. OpenAccess Software

H. Lue, D. Derrick, S. Rao, A. Van Gaest, L. Cheng, J. Podolak, S. Lawson, C. Xue, D. Garg, R. White III, C. Ryan, J. Drake, A. Ritz, L. M. Heiser, and G. V. Thomas. Cell Reports Medicine 2021.

2020

A. Platenkamp, E. Detmar, L. Sepulveda, A. Ritz, S.L. Rogers, and D. A. Applewhite. Molecular Biology of the Cell 2020. OpenAccess

T. Rubel and A. Ritz. 11th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM-BCB) 2020. OpenAccess Software

A. Nambiar, M. Heflin, S. Liu, S. Maslov, M. Hopkins, and A. Ritz. 11th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM-BCB) 2020. OpenAccess Software

A. R. Lazarte and A. Ritz. 5th International Conference on Research in Equity and Sustained Participation in Engineering, Computing, and Technology (RESPECT) 2020.

O. L. Rodriguez, A. Ritz, A. J. Sharp, A. Bashir. Bioinformatics.

2019

A. King, I. Youssef, A. Ritz. 10th Workshop on Integrative Data Analysis in Systems Biology (IDASB) 2019.

Z. DiNardo, K. Tomlinson, A. Ritz, L. Oesper. Bioinformatics.

N. Franzese, A. Groce, T. M. Murali, A. Ritz. PLOS Computational Biology. Software OpenAccess

I. Youssef, J. Law, A. Ritz. BMC Bioinformatics 2019. Software OpenAccess

M. Swanberg, I. Globus-Harris, I. Griffith, A. Ritz, A. Bray, A. Groce. 19th Privacy Enhancing Technologies Symposium (PETS) 2019.

M. Bern, A. King, D. A. Applewhite, A. Ritz. BMC Bioinformatics. Software OpenAccess

2018

K. A. Peters, E. Detmar, L. Seulveda, C. Del Valle, R. Valsquier, A. Ritz, S. L. Rogers, D. A. Applewhite. Journal of Visualized Experiments (JoVE) (138), e58325. OpenAccess

Z. Campbell, A. Bray, A. Ritz, A. Groce. To appear at the International Conference on Data Intelligence and Security (ICDIS 2018).

A. Ritz. ACM Special Interest Group in Computer Science Education (SIGCSE 2018). [resources] OpenAccess

2017

H. Lue, J. Podolak, K. Kolahi, L. cheng, S. Rao, D. Garg, C. Xue, J. Rantala, J. Tyner, K. Thornburg, A. Martinez-Acevedo, J. Liu, C. Amling, C. Truillet, M. Evans, V. O'Donnell, D. Nomura, J. Drake, A. Ritz, G. Thomas. Genes & Development 2017. Oct 15;31(20):2067- 2084.

A. Bharadwaj, D. P. Singh, A. Ritz, A. N. Tegge, C. L. Poirel, P. Kraikivski, N. Adames, K. Luther, S. D. Kale, J. Peccoud, J. J. Tyson, T. M. Murali. Bioinformatics 2017. 33(19):3134-3136. Software

. A. Ritz, B. Avent, T. M. Murali. IEEE Transactions on Computational Biology and Bioinformatics (TCBB) 2017. 15(5):1042-1055.Software

2016

. A. Ritz, C. L. Poirel, A. N. Tegge, N. Sharp, A. Powell, K. Simmons, S. Kale, T. M. Murali. NPJ Systems Biology and Applications, 2:16002, 2016. Software

2015

2014

A. Ritz, A. Bashir, S. Sindi, D. Hsu, I. Hajirasouliha, B.J. Raphael. Bioinformatics 2014. 30(24):3458-66. Software

A. Ritz and T. M. Murali. Proceedings of the Fifth ACM Conference on Bioinformatics, Computational Biology, and Health Informatics 2014. 249–258. Nominated for Best Paper Award.

A. Ritz, A. N. Tegge, H. Kim, C. L. Poirel, T. M. Murali. Trends in Biotechnology, 32(7), 356-362, 2014. AR, ANT joint first authors.

2013

2012

L. Oesper, A. Ritz, S. J. Aerni, R. Drebin, B. J. Raphael. BMC Bioinformatics 2012. 13(Suppl 6):S10. Special Issue of RECOMB-Seq 2012.

A. Ritz. Ph.D. Thesis, Brown University (2012)

L. Cao, Y. Ding, N. Hung, K.Yu, A. Ritz, B. J. Raphael, A. R. Salomon. PLoS ONE 2014. 7,10:e46725

2011

A. Stuckey, A. Fischer, D. H. Miller, S. Hillenmeyer, K. K. Kim, A. Ritz, R. K. Singh, B. J. Raphael, L. Brard, A. S. Brodsky. BMC Cancer 2011. 11:308.

A. Ritz, P. Pareis, M. M. Ittmann, C. Collins, B. J. Raphael. BMC Bioinformatics 2011. 12:114. Special Issue of RECOMB-CCB 2010.
Highly Accessed. Software

2010

T. O'Brien, A. Ritz, B. J. Raphael, D. H. Laidlaw. IEEE Transactions on Visualization and Computer Graphics 16(6):918-26. Proceedings of the IEEE Information Visualization Conference (InfoViz) 2010. Software

A. Ritz, A. Bashir, B. J. Raphael. Bioinformatics 2010. 26(10): 1291-1298. Special Issue of HiTSeq 2010.

D. S. Gross, R. Atlas, J. Rzeszotarski, E. Turetsky, J. Christensen, S. Benzaid, J. Olson, T. Smith, L. Steinberg, J. Sulman, A. Ritz, B. Anderson, C. Nelson, D. R. Musicant, L. Chen, D. C. Snyder, J. J. Schauer. Environmental Modelling & Software 2010. 25(6):760-769.

2009

V. Nguyen, L. Cao, J. T. Lin, N. Hung, A. Ritz, K. Yu, R. Jianu, S. P. Ulin, B. J. Raphael, D. H. Laidlaw, L. Brossay, A. R. Salomon. Molecular and Cellular Proteomics 2009. 8: 2418-2431.

A. Ritz, G. Shakhnarovich, A. R. Salomon, B. J. Raphael. Bioinformatics 2009. 25(1):14-21. Software

< 2009

A. Ritz. Sc. M. Thesis, Brown University (2008).

L. Cao, K. Yu, C. Banh, V. Nguyen, A. Ritz, B. J. Raphael, Y. Kawakami, T. Kawakami, A. R. Salomon, Journal of Immunology 2007. 179: 5864-5876.

B. J. Anderson, D. S. Gross, D. R. Musicant, A. Ritz, T. G. Smith, L. E. Steinberg. Proceedings of the Sixth SIAM International Conference on Data Mining (SDM) 2006. pp165-175.

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Contact

Biology Department
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3203 SE Woodstock Blvd.
Portland, OR 97202-8199

Email icon aritz-at-reed-dot-edu

CV icon Curriculum Vitae [pdf]



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